A three-fold twin in B21


7/7: Solve using B21

Although B21 is unconventional, a SHELXD ins file to solve the structure can easily be made from the file used to solve in P21. All it takes is to change the number on the LATT command from '-1' to '-6', which specifies a non-centrosymmetric B-centered cell. Nevertheless, the solution is likely to run faster and be more complete using the detwinned dataset. Subsequent refinement should, of course, use the full dataset, and include three-fold twinning.

B21-solve-B21-1

SHELXD easily solves the structure ...

B21-solve-B21-2

... and finds all of the non-hydrogen atoms. The only drawback is SHELXD assigned atoms exclusively as carbon, which is apparent if we view it in Mercury:

B21-solve-B21-3

That is easily fixed, e.g., using ShelXle:

B21-solve-B21-4

To refine as a three-component twin, the TWIN matrix used for the original P21 model will work. Just remember to specify three components, a BASF with two fractions, and include 'LATT -6' to ensure a B-centered cell. The model refines smoothly, with no need for constraints or restraints, even when fully anisotropic. Here's a look at the complete asymmetric unit:

B21-solve-B21-5

It still needs a sensible numbering scheme and since Z' = 6, it's best to number them all the same way and make each a separate 'RESI'. That's easy enough to do, but not necessary for this tutorial. For all intents and purposes, the problem is solved.

An entertaining postscript for 9mj is that B21 caused the validation routines in Platon and checkCIF to throw a massive wobbler. Those issues were quickly patched (thanks to Ton Spek). CheckCIF still returns an 'A-level' squawk about space group type B21, but it is trivial to justify.



1: Introduction
2: Set up instructions using XPREP
3: Solve using P21 with SHELXD
4: Detwin using SHELXL
5: Analyze detwinned dataset using XPREP
6: Three-fold twinning in graphic detail
7: Solve using B21 with SHELXD

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